Shepherd University writing requirements


  • Core curriculum requirements:
    • Writing in the major
    • Capstone in the major


  • This writing-intensive course views “writing as a mode of learning”
    • employs writing assignments as ways of helping students learn the material rather than as vehicles for regurgitating material.


  • A major instructional focus is on the writing process through detailed evaluation, feedback, and revision opportunities
    • highlights multiple stages of the writing process
    • e.g., idea formulation, refinement of argument/hypothesis, structuring/outlining, drafting, revising


  • Students should write no fewer than 30 pages
    • includes all pages in all stages of the writing process (i.e., drafts, early versions, outlines, revisions).

Biology department capstone requirements



  • BIOL 425 addresses the learning outcomes of oral communication, written communication, lifelong learning, ethical practices and ethical reasoning, and experiential learning.
    • meets Core Curriculum requirements for Writing in the Major and Integrative Learning + prepares students to describe, explain, and communicate about natural phenomena


  • Prepare a research paper detailing their research experiences.
    • encompass several drafts and revisions with the guidance of their research mentor
    • final draft is typically 15-65 pages


  • Present research in an oral forum to the biology faculty and others in the University science community with the use of appropriate visual aids, conduct themselves professionally, and field questions from the attendees.

The capstone paper




  • You will choose a biological topic of interest to you and prepare an original piece of scientific writing in the form of a written paper
    • make this a part of your career development


  • This is not a book report: An important aspect of the project is its novelty—your goal is to synthesize information around a topic and draw conclusions about a hypothesis or question


  • Various aspects of both parts will be evaluated and critiqued by me, other biology faculty members, and your classmates

Types of capstone papers







  • Data-driven scientific paper
    • own scientific research
    • open-source data (new option)


  • Narrative literature synthesis


  • Literature meta-analysis

Original research paper



  • Based on research you have performed yourself (at Shepherd or elsewhere)

or

  • A question you address using publicly available (non-published) data


  • Data presented in narrative and graphical form (i.e. has data figures/tables)


  • Essentially a primary research paper in the traditional format: Abstract, Introduction, Experimental Procedures, Results, Discussion, Conclusion, Literature Cited

Research paper (data from summer/semester research projects)


Intersted in a research paper BUT you lack data?



  • I have answers!


  • Free to use data are available from many sources
    • new movement in science
    • unpublished and published data,


  • We will discuss this in this weeks workshop


  • Lots of medical and ecological data
    • potential to create a novel Capstone project

Narrative literature synthesis



  • Based on an extensive review of the primary literature around a given topic or question
    • Researcher reviews results of many studies
    • Research and makes judgments about the connections between variables
    • Evaluate, analyze, compare and contrast these studies focusing on your central question—reveal strengths, biases, weaknesses
    • The goal is to present the primary papers in a new light or tie them together in a new way


  • Contains representative figures, summary data tables, and/or informational figures


  • Similar to a journal review article with this format: Abstract, Introduction, Body with subheadings (each section examines a different aspect of your topic/question), Discussion/Conclusion, Literature Cited

Review paper example


Literature meta-analysis



  • A systematic review of a focused topic in the literature that provides a quantitative estimate for the effect of an experimental treatment
    • Used to examine a specific issue to determine whether a conclusion can be reached regarding the effect of a treatment or exposure (broad conclusions)
    • Often used to address controversial issues in medicine
    • Used to understand global patterns in ecology


  • Relies on data reported in primary research papers—a meta-analysis uses a statistical method to “combine” this data together to reach a conclusion


  • Format: Abstract, Introduction, Materials and Methods, Results, Discussion, Literature Cited, Tables and Figures

Meta-analysis example


Douglas RM, Hemila H, D’Souza R, et al. Vitamin C for preventing and treating the common cold. Cochrane Database Syst Rev. 2004;4:CD000980.

















“The lack of effect of prophylactic vitamin C supplementation on the incidence of common cold in normal populations throws doubt on the utility of this wide practice.”

Meta-analyses are important: Cesar Terrer


Mycorrhizal association as a primary control of the CO2 fertilization effect (Science 2016)

Ecosystem responses to elevated CO2 governed by plant–soil interactions and the cost of nitrogen acquisition (New Phytologist 2018)

Nitrogen and phosphorus constrain the CO2 fertilization of global plant biomass (Nature Climate Change 2019)

A trade-off between plant and soil carbon storage under elevated CO2 (Nature 2021)

General considerations for capstone paper evaluation


  • Papers will be reviewed as complete drafts being submitted for peer review at a journal
    • However, the paper is the work of the student and not a professional


  • Papers must contain every sections appropriate to that type of paper.


  • The text will be reviewed for scientific content:
    • Sufficient detail that a reviewer can understand the project’s rationale and conclusions without being an expert.


  • The text will be evaluated for quality of writing, including sentence structure, word usage, grammar spelling, and other writing mechanics.


  • Papers will also be reviewed for technical elements such as appropriate use of references and citations, figure legends, reference citations, and appropriate figure legends.

How will the capstone paper be evaluated?


Rough and final drafts of your capstone paper will be evaluated according to a rubric on Brightspace

Content, style and error-free writing matter!


Questions? Now is not the time to be shy….


Finishing Week 1…



  • New workshop based on Open Science
    • potential to use open source (unpublished) data to design an original Capstone project
      • Huge brownie points from Dr. C
    • potential to utilize open source (published) data as part of a literature synthesis or meta-analysis


  • Friday: First Writing Session. Let’s get organized and brainstorm.
    • You should walk away with one or several ideas for your capstone


  • Pull out the answers to your questions from lecture 1….anything new to jot down!?!?


  • Some previous Capstone topic titles are on Brightspace